TSS: Rfhg 179779.1: Difference between revisions

Revision as of 13:03, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_179779.1
Species:	human
Chr:	chr16

Start:	2091513
End:	2091527
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2836794,EH38E1796346)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000563284.3:12
GeneID:	105371049
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000570072.5:-77 NR_135175.1:-77 view more...

Gene_name:	LOC105371049
Gene_symbol:	PKD1-AS1
Gene_synonyms:
Gene_source:	EntrezGene:105371049

TATA-Box annotation

Distance to TSS:	84
Nearest PromoterID:	NR_135175
Entrez ID:	105371049
Nearest Unigene:	Hs.710709
Nearest Refseq:	NR_135175
Nearest Ensembl:	ENSG00000259933
Gene Name:	LOC105371049
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.214286
GC%:	0.733333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000563284.3:12 ENST00000570072.5:-77 NR_135175.1:-77
 |annotation=promoter-TSS (NR_135175)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_135175
 |nearest_refseq=NR_135175
+|nearest_transcripts=ENST00000570072.5:-77 NR_135175.1:-77
 |nearest_unigene=Hs.710709
 |peak_score=1