TSS: Rfhg 179965.1: Difference between revisions

Revision as of 13:06, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_179965.1
Species:	human
Chr:	chr16

Start:	2765006
End:	2765034
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2837508,EH38E1796903)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF340642:-29 MA576219:-29
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AB016091:-48 DQ589293:92 LF340643:237 MA576220:237 LF340644:438 MA576221:438 view more...

Gene_name:	ELOB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	12260
Nearest PromoterID:	NM_007108
Entrez ID:	6923
Nearest Unigene:	Hs.172772
Nearest Refseq:	NM_007108
Nearest Ensembl:	ENSG00000103363
Gene Name:	ELOB
Gene Alias:	SIII\|TCEB2
Gene Type:	protein-coding
CpG%:	0.071429
GC%:	0.586207
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF340642:-29 MA576219:-29 AB016091:-48 DQ589293:92 LF340643:237 MA576220:237 LF340644:438 MA576221:438
 |annotation=exon (NM_016333, exon 11 of 15)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_007108
 |nearest_refseq=NM_007108
+|nearest_transcripts=AB016091:-48 DQ589293:92 LF340643:237 MA576220:237 LF340644:438 MA576221:438
 |nearest_unigene=Hs.172772
 |peak_score=1