TSS: Rfhg 180235.1: Difference between revisions

Revision as of 13:11, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_180235.1
Species:	human
Chr:	chr16

Start:	3401113
End:	3401113
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2838242,EH38E1797506)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000618425.4:48 ENST00000396846.8:48
GeneID:	54925
HGNC/MGI_ID:	HGNC:20812
UniProt_ID:	A0A499FJR9 Q9NX65
Nearer transcript ids and distances:	ENST00000304926.7:88 AY261676:88 AK303338:88 ENST00000422427.6:100 AK299070:100 AK291213:102 ENST00000396852.9:109 NM_001324340.2:109 NM_001284527.2:109 NM_001324342.2:109 NM_001324346.2:109 NM_001324344.2:109 NM_001324341.2:109 NM_001324345.2:109 NM_001284528.2:109 NM_001324343.2:109 NM_001284529.2:109 NM_017810.4:109 ENST00000576500.5:118 AK056463:118 ENST00000439568.2:119 AK301586:119 ENST00000573830.1:124 ENST00000571906.1:137 BC002859:149 view more...

Gene_name:	ZSCAN32
Gene_symbol:	ZSCAN32
Gene_synonyms:	FLJ20417
Gene_source:	HGNC:20812

TATA-Box annotation

Distance to TSS:	-48
Nearest PromoterID:	NM_001284528
Entrez ID:	54925
Nearest Unigene:	Hs.592078
Nearest Refseq:	NM_017810
Nearest Ensembl:	ENSG00000140987
Gene Name:	ZSCAN32
Gene Alias:	HCCS-5\|ZNF434
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000304926.7:88 AY261676:88 AK303338:88 ENST00000422427.6:100 AK299070:100 AK291213:102 ENST00000396852.9:109 NM_001324340.2:109 NM_001284527.2:109 NM_001324342.2:109 NM_001324346.2:109 NM_001324344.2:109 NM_001324341.2:109 NM_001324345.2:109 NM_001284528.2:109 NM_001324343.2:109 NM_001284529.2:109 NM_017810.4:109 ENST00000576500.5:118 AK056463:118 ENST00000439568.2:119 AK301586:119 ENST00000573830.1:124 ENST00000571906.1:137 BC002859:149" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000618425.4:48 ENST00000396846.8:48 ENST00000304926.7:88 AY261676:88 AK303338:88 ENST00000422427.6:100 AK299070:100 AK291213:102 ENST00000396852.9:109 NM_001324340.2:109 NM_001284527.2:109 NM_001324342.2:109 NM_001324346.2:109 NM_001324344.2:109 NM_001324341.2:109 NM_001324345.2:109 NM_001284528.2:109 NM_001324343.2:109 NM_001284529.2:109 NM_017810.4:109 ENST00000576500.5:118 AK056463:118 ENST00000439568.2:119 AK301586:119 ENST00000573830.1:124 ENST00000571906.1:137 BC002859:149
 |annotation=promoter-TSS (NM_001347868)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001284528
 |nearest_refseq=NM_017810
+|nearest_transcripts=ENST00000304926.7:88 AY261676:88 AK303338:88 ENST00000422427.6:100 AK299070:100 AK291213:102 ENST00000396852.9:109 NM_001324340.2:109 NM_001284527.2:109 NM_001324342.2:109 NM_001324346.2:109 NM_001324344.2:109 NM_001324341.2:109 NM_001324345.2:109 NM_001284528.2:109 NM_001324343.2:109 NM_001284529.2:109 NM_017810.4:109 ENST00000576500.5:118 AK056463:118 ENST00000439568.2:119 AK301586:119 ENST00000573830.1:124 ENST00000571906.1:137 BC002859:149
 |nearest_unigene=Hs.592078
 |peak_score=1