TSS: Rfhg 182000.1: Difference between revisions

Revision as of 13:44, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_182000.1
Species:	human
Chr:	chr16

Start:	22298204
End:	22298210
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2852535,EH38E1807294)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	POLR3E
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	798
Nearest PromoterID:	NM_018119
Entrez ID:	55718
Nearest Unigene:	Hs.460298
Nearest Refseq:	NM_018119
Nearest Ensembl:	ENSG00000058600
Gene Name:	POLR3E
Gene Alias:	RPC5\|SIN
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001258035, intron 1 of 19).2
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_018119
 |nearest_refseq=NM_018119
+|nearest_transcripts=
 |nearest_unigene=Hs.460298
 |peak_score=1