TSS: Rfhg 183158.1: Difference between revisions

Revision as of 14:07, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_183158.1
Species:	human
Chr:	chr16

Start:	30762146
End:	30762157
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2858873,EH38E1811701)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000546006.5:-8 BC063391:-8
GeneID:	90835
HGNC/MGI_ID:	HGNC:28078
UniProt_ID:
Nearer transcript ids and distances:	ENST00000544487.5:-41 AL122109:-41 AK307279:59 ENST00000545809.1:61 ENST00000543128.5:-64 BC092491:-64 ENST00000541260.5:67 ENST00000545825.1:68 BC073881:68 ENST00000543610.6:84 NM_001014979.3:84 NM_001195620.2:84 ENST00000544643.5:163 BC042548:163 ENST00000433909.2:398 BC128128:398 BC128129:398 KJ895139:398 view more...

Gene_name:	CCDC189
Gene_symbol:	CFAP119
Gene_synonyms:	MGC104706
Gene_source:	HGNC:28078

TATA-Box annotation

Distance to TSS:	-89
Nearest PromoterID:	NM_001014979
Entrez ID:	90835
Nearest Unigene:	Hs.724010
Nearest Refseq:	NM_001014979
Nearest Ensembl:	ENSG00000196118
Gene Name:	CCDC189
Gene Alias:	C16orf93
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000544487.5:-41 AL122109:-41 AK307279:59 ENST00000545809.1:61 ENST00000543128.5:-64 BC092491:-64 ENST00000541260.5:67 ENST00000545825.1:68 BC073881:68 ENST00000543610.6:84 NM_001014979.3:84 NM_001195620.2:84 ENST00000544643.5:163 BC042548:163 ENST00000433909.2:398 BC128128:398 BC128129:398 KJ895139:398" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000546006.5:-8 BC063391:-8 ENST00000544487.5:-41 AL122109:-41 AK307279:59 ENST00000545809.1:61 ENST00000543128.5:-64 BC092491:-64 ENST00000541260.5:67 ENST00000545825.1:68 BC073881:68 ENST00000543610.6:84 NM_001014979.3:84 NM_001195620.2:84 ENST00000544643.5:163 BC042548:163 ENST00000433909.2:398 BC128128:398 BC128129:398 KJ895139:398
 |annotation=promoter-TSS (NM_001286572)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001014979
 |nearest_refseq=NM_001014979
+|nearest_transcripts=ENST00000544487.5:-41 AL122109:-41 AK307279:59 ENST00000545809.1:61 ENST00000543128.5:-64 BC092491:-64 ENST00000541260.5:67 ENST00000545825.1:68 BC073881:68 ENST00000543610.6:84 NM_001014979.3:84 NM_001195620.2:84 ENST00000544643.5:163 BC042548:163 ENST00000433909.2:398 BC128128:398 BC128129:398 KJ895139:398
 |nearest_unigene=Hs.724010
 |peak_score=1