TSS: Rfhg 184376.1: Difference between revisions

Revision as of 14:26, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_184376.1
Species:	human
Chr:	chr16

Start:	55479286
End:	55479286
Strand:	+

Source datasets

DRA013844

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2867796,EH38E1817405)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF373563:11 MA609140:11
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC002576:-72 AK312711:-83 ENST00000219070.9:-88 NM_004530.6:-88 X58968:-106 LF213753:-128 MA449330:-128 LF208225:-166 MA443802:-166 CU678050:194 DQ891952:194 AB385158:194 DQ895138:194 KJ897194:194 KR710612:194 KR710613:194 J03210:242 ENST00000568715.5:-456 NM_001302508.1:-456 view more...

Gene_name:	MMP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	88
Nearest PromoterID:	NM_004530
Entrez ID:	4313
Nearest Unigene:	Hs.513617
Nearest Refseq:	NM_004530
Nearest Ensembl:	ENSG00000087245
Gene Name:	MMP2
Gene Alias:	CLG4\|CLG4A\|MMP-2\|MMP-II\|MONA\|TBE-1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "BC002576:-72 AK312711:-83 ENST00000219070.9:-88 NM_004530.6:-88 X58968:-106 LF213753:-128 MA449330:-128 LF208225:-166 MA443802:-166 CU678050:194 DQ891952:194 AB385158:194 DQ895138:194 KJ897194:194 KR710612:194 KR710613:194 J03210:242 ENST00000568715.5:-456 NM_001302508.1:-456" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF373563:11 MA609140:11 BC002576:-72 AK312711:-83 ENST00000219070.9:-88 NM_004530.6:-88 X58968:-106 LF213753:-128 MA449330:-128 LF208225:-166 MA443802:-166 CU678050:194 DQ891952:194 AB385158:194 DQ895138:194 KJ897194:194 KR710612:194 KR710613:194 J03210:242 ENST00000568715.5:-456 NM_001302508.1:-456
 |annotation=promoter-TSS (NM_001302510)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_004530
 |nearest_refseq=NM_004530
+|nearest_transcripts=BC002576:-72 AK312711:-83 ENST00000219070.9:-88 NM_004530.6:-88 X58968:-106 LF213753:-128 MA449330:-128 LF208225:-166 MA443802:-166 CU678050:194 DQ891952:194 AB385158:194 DQ895138:194 KJ897194:194 KR710612:194 KR710613:194 J03210:242 ENST00000568715.5:-456 NM_001302508.1:-456
 |nearest_unigene=Hs.513617
 |peak_score=1