TSS: Rfhg 186218.1: Difference between revisions

Revision as of 15:01, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_186218.1
Species:	human
Chr:	chr16

Start:	72665174
End:	72665216
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2881308,EH38E1826429)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000563328.4:-4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK021563:-5 ENST00000653037.1:-36 NR_171705.1:-41 NR_171704.1:-41 NR_171703.1:-41 NR_171702.1:-41 ENST00000668995.1:-51 view more...

Gene_name:	LINC01572
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-225
Nearest PromoterID:	NR_159370
Entrez ID:	101927957
Nearest Unigene:	Hs.637253
Nearest Refseq:	NR_126330
Nearest Ensembl:	ENSG00000261008
Gene Name:	LINC01572
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.047619
GC%:	0.581395
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000563328.4:-4 AK021563:-5 ENST00000653037.1:-36 NR_171705.1:-41 NR_171704.1:-41 NR_171703.1:-41 NR_171702.1:-41 ENST00000668995.1:-51
 |annotation=promoter-TSS (NR_126330)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_159370
 |nearest_refseq=NR_126330
+|nearest_transcripts=AK021563:-5 ENST00000653037.1:-36 NR_171705.1:-41 NR_171704.1:-41 NR_171703.1:-41 NR_171702.1:-41 ENST00000668995.1:-51
 |nearest_unigene=Hs.637253
 |peak_score=1