TSS: Rfhg 186722.1: Difference between revisions

Revision as of 15:10, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_186722.1
Species:	human
Chr:	chr16

Start:	81478574
End:	81478615
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2888861,EH38E1831366)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CMIP
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-16760
Nearest PromoterID:	NM_030629
Entrez ID:	80790
Nearest Unigene:	Hs.594095
Nearest Refseq:	NM_030629
Nearest Ensembl:	ENSG00000153815
Gene Name:	CMIP
Gene Alias:	TCMIP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.595238
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_198390, intron 1 of 20)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_030629
 |nearest_refseq=NM_030629
+|nearest_transcripts=
 |nearest_unigene=Hs.594095
 |peak_score=1