TSS: Rfhg 186758.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000623398.1:-440 AK094104:-440
|annotation=intron (NM_030629, intron 2 of 20)
|annotation=intron (NM_030629, intron 2 of 20)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NR_106759
|nearest_promoter_id=NR_106759
|nearest_refseq=NR_106759
|nearest_refseq=NR_106759
|nearest_transcripts=
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1

Revision as of 15:10, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_186758.1
Species:human
Chr:chr16
Start:81618945
End:81618955
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D2889066,EH38E1831558)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000623398.1:-440
AK094104:-440
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:MIR6504
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:7602
    Nearest PromoterID:NR_106759
    Entrez ID:102465251
    Nearest Unigene:
    Nearest Refseq:NR_106759
    Nearest Ensembl:ENSG00000275109
    Gene Name:MIR6504
    Gene Alias:hsa-mir-6504
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.454545
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_186758.1&oldid=3252370"