TSS: Rfhg 187545.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000567895.5:0 ENST00000301021.7:0 ENST00000625770.2:0 ENST00000564547.1:0 ENST00000562792.1:0 ENST00000565504.5:0 ENST00000565205.5:0 ENST00000567312.5:0 ENST00000568583.5:0 ENST00000564404.5:0 NM_001318526.2:0 NM_001318530.2:0 NM_001318528.2:0 NM_001318532.2:0 NM_001318529.2:0 NM_001318527.2:0 NM_001318525.2:0 NM_016209.5:0 NM_001318524.2:0 NR_134670.2:0 AF089106:0 AK311885:0 BC105809:0 AK126779:0 AF161524:0 AK310805:0 BC018024:0 BC011369:0 KJ902612:0 ENST00000561840.1:15
|annotation=promoter-TSS (NR_134670)
|annotation=promoter-TSS (NR_134670)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001318530
|nearest_promoter_id=NM_001318530
|nearest_refseq=NM_016209
|nearest_refseq=NM_016209
|nearest_transcripts=ENST00000561840.1:15
|nearest_unigene=Hs.461722
|nearest_unigene=Hs.461722
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000567895.5 ENST00000301021.7 ENST00000625770.2 ENST00000564547.1 ENST00000562792.1 ENST00000565504.5 ENST00000565205.5 ENST00000567312.5 ENST00000568583.5 ENST00000564404.5 AF089106 AK311885 BC105809 AK126779 AF161524 AK310805 BC018024 BC011369
|transcript_name=ENST00000567895.5 ENST00000301021.7 ENST00000625770.2 ENST00000564547.1 ENST00000562792.1 ENST00000565504.5 ENST00000565205.5 ENST00000567312.5 ENST00000568583.5 ENST00000564404.5 NM_001318526.2 NM_001318530.2 NM_001318528.2 NM_001318532.2 NM_001318529.2 NM_001318527.2 NM_001318525.2 NM_016209.5 NM_001318524.2 NR_134670.2 AF089106 AK311885 BC105809 AK126779 AF161524 AK310805 BC018024 BC011369 KJ902612
|tss_cluster_detected=14
|tss_cluster_detected=14
|tss_id=rfhg_187545.1
|tss_id=rfhg_187545.1

Revision as of 15:25, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_187545.1
TSS ID(Version3):hg_155563.1
Species:human
Chr:chr16
Start:88857068
End:88857153
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|PRJDB5282|PRJNA4843412|DRA013844
|PRJNA401781|PRJNA548673|PRJNA615891|PRJNA597322
ProtocolCAGE|TSS_database|C1CAGE|NETCAGE|RAMPAGE|oligo_capping
|ReCappable-seq|SLIC_CAGE|TIF-seq2|STRIPE-seq
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2897170,EH38E1837528)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000567895.5:0
ENST00000301021.7:0
ENST00000625770.2:0
ENST00000564547.1:0
ENST00000562792.1:0
ENST00000565504.5:0
ENST00000565205.5:0
ENST00000567312.5:0
ENST00000568583.5:0
ENST00000564404.5:0
NM_001318526.2:0
NM_001318530.2:0
NM_001318528.2:0
NM_001318532.2:0
NM_001318529.2:0
NM_001318527.2:0
NM_001318525.2:0
NM_016209.5:0
NM_001318524.2:0
NR_134670.2:0
AF089106:0
AK311885:0
BC105809:0
AK126779:0
AF161524:0
AK310805:0
BC018024:0
BC011369:0
KJ902612:0
GeneID:51693
HGNC/MGI_ID:HGNC:30887
UniProt_ID:A0A0B4J286 A0A0B4J294 H3BP13 H3BPE0 H3BPN3 H3BUK6 Q9UL33
Nearer transcript ids and distances:
  • ENST00000561840.1:15
Gene_name:TRAPPC2L
Gene_symbol:TRAPPC2L
Gene_synonyms:HSPC176
Gene_source:HGNC:30887



TATA-Box annotation

Distance to TSS:-17
Nearest PromoterID:NM_001318530
Entrez ID:51693
Nearest Unigene:Hs.461722
Nearest Refseq:NM_016209
Nearest Ensembl:ENSG00000167515
Gene Name:TRAPPC2L
Gene Alias:HSPC176|PERRB
Gene Type:protein-coding
CpG%:0.129412
GC%:0.732558
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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