TSS: Rfhg 187872.1: Difference between revisions

Revision as of 15:31, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_187872.1
Species:	human
Chr:	chr17

Start:	521718
End:	521726
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2899012,EH38E1839079)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ902801:-12
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RFLNB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-75782
Nearest PromoterID:	NM_182705
Entrez ID:	359845
Nearest Unigene:	Hs.345588
Nearest Refseq:	NM_182705
Nearest Ensembl:	ENSG00000183688
Gene Name:	RFLNB
Gene Alias:	CFM1\|FAM101B
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KJ902801:-12
 |annotation=exon (NM_001128159, exon 20 of 22)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_182705
 |nearest_refseq=NM_182705
+|nearest_transcripts=
 |nearest_unigene=Hs.345588
 |peak_score=1