TSS: Rfhg 189747.1: Difference between revisions

Revision as of 16:07, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_189747.1
Species:	human
Chr:	chr17

Start:	8161652
End:	8161662
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2906745,EH38E1845043)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF326289:-98 MA561866:-98
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	VAMP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1219
Nearest PromoterID:	NM_001330125
Entrez ID:	6844
Nearest Unigene:	Hs.25348
Nearest Refseq:	NM_014232
Nearest Ensembl:	ENSG00000220205
Gene Name:	VAMP2
Gene Alias:	SYB2\|VAMP-2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.272727
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF326289:-98 MA561866:-98
 |annotation=exon (NM_001330125, exon 3 of 5)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001330125
 |nearest_refseq=NM_014232
+|nearest_transcripts=
 |nearest_unigene=Hs.25348
 |peak_score=1