TSS: Rfhg 190170.1: Difference between revisions

Revision as of 16:15, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_190170.1
Species:	human
Chr:	chr17

Start:	11997586
End:	11997633
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2909935,EH38E1847194)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZNF18
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-99
Nearest PromoterID:	NM_001303282
Entrez ID:	7566
Nearest Unigene:	Hs.370473
Nearest Refseq:	NM_144680
Nearest Ensembl:	ENSG00000154957
Gene Name:	ZNF18
Gene Alias:	HDSG1\|KOX11\|ZKSCAN6\|ZNF535\|ZSCAN38\|Zfp535
Gene Type:	protein-coding
CpG%:	0.063830
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_001303281)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001303282
 |nearest_refseq=NM_144680
+|nearest_transcripts=
 |nearest_unigene=Hs.370473
 |peak_score=1