TSS: Hg 102333.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-2481 |entrez_id=7185 |gc_percent=0.427861 |gene_alias=EBI6|MGC:10353 |gene_description=TNF receptor associated factor 1 |gene_name...") |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|MGC:10353= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=-2481 | |distance_to_tss=-2481 | ||
|end=120931671 | |||
|entrez_id=7185 | |entrez_id=7185 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
Line 12: | Line 16: | ||
|nearest_refseq=NM_005658 | |nearest_refseq=NM_005658 | ||
|nearest_unigene=Hs.531251 | |nearest_unigene=Hs.531251 | ||
|num_trans=0 | |||
|species=human | |||
|start=120931636 | |||
|strand=- | |||
|tata_box="59(GCTTTTATAGGC,+,0.00)" | |tata_box="59(GCTTTTATAGGC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102333.1 | |tss_id=hg_102333.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 19:21, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -2481 |
---|---|
Nearest PromoterID: | NM_001190945 |
Entrez ID: | 7185 |
Nearest Unigene: | Hs.531251 |
Nearest Refseq: | NM_005658 |
Nearest Ensembl: | ENSG00000056558 |
Gene Name: | TRAF1 |
Gene Alias: | EBI6 |
Gene Description: | TNF receptor associated factor 1 |
Gene Type: | protein-coding |
CpG%: | 0 |
GC%: | 0.427861 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "59(GCTTTTATAGGC,+,0.00)" |