TSS: Rfhg 190644.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000578174.5:0 ENST00000395704.8:0 ENST00000395703.8:0 ENST00000577216.1:0 ENST00000578621.5:0 ENST00000579341.5:0 ENST00000583745.1:0 ENST00000323019.9:0 NM_001144900.3:0 NM_139162.4:0 LF209095:0 MA444672:0 AK128310:0 AK056165:-4 LF326097:324 MA561674:324 ENST00000395706.2:439 NM_148886.2:439 AF467443:439 BC014973:439
|annotation=promoter-TSS (NM_001144900)
|annotation=promoter-TSS (NM_001144900)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_139162
|nearest_promoter_id=NM_139162
|nearest_refseq=NM_139162
|nearest_refseq=NM_139162
|nearest_transcripts=AK056165:-4 LF326097:324 MA561674:324 ENST00000395706.2:439 NM_148886.2:439 AF467443:439 BC014973:439
|nearest_unigene=Hs.655555
|nearest_unigene=Hs.655555
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000578174.5 ENST00000395704.8 ENST00000395703.8 ENST00000577216.1 ENST00000578621.5 ENST00000579341.5 ENST00000583745.1 ENST00000323019.9 AK128310
|transcript_name=ENST00000578174.5 ENST00000395704.8 ENST00000395703.8 ENST00000577216.1 ENST00000578621.5 ENST00000579341.5 ENST00000583745.1 ENST00000323019.9 NM_001144900.3 NM_139162.4 LF209095 MA444672 AK128310
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_190644.1
|tss_id=rfhg_190644.1

Revision as of 16:23, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_190644.1
Species:human
Chr:chr17
Start:18260559
End:18260671
Strand:+
Source datasetsPRJNA4843412|DRA013844
ProtocolNETCAGE|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2915414,EH38E1850975)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000578174.5:0
ENST00000395704.8:0
ENST00000395703.8:0
ENST00000577216.1:0
ENST00000578621.5:0
ENST00000579341.5:0
ENST00000583745.1:0
ENST00000323019.9:0
NM_001144900.3:0
NM_139162.4:0
LF209095:0
MA444672:0
AK128310:0
GeneID:125170
HGNC/MGI_ID:HGNC:17920
UniProt_ID:A8MT25 J3KTJ4 J3QR30 K7EKV6 Q96C03
Nearer transcript ids and distances:
  • AK056165:-4
  • LF326097:324
  • MA561674:324
  • ENST00000395706.2:439
  • NM_148886.2:439
  • AF467443:439
  • BC014973:439
view more...
Gene_name:MIEF2
Gene_symbol:MIEF2
Gene_synonyms:MGC23130 MiD49
Gene_source:HGNC:17920



TATA-Box annotation

Distance to TSS:-47
Nearest PromoterID:NM_139162
Entrez ID:125170
Nearest Unigene:Hs.655555
Nearest Refseq:NM_139162
Nearest Ensembl:ENSG00000177427
Gene Name:MIEF2
Gene Alias:MID49|SMCR7
Gene Type:protein-coding
CpG%:0.089286
GC%:0.654867
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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