TSS: Rfhg 191470.1: Difference between revisions

Revision as of 16:39, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_191470.1
Species:	human
Chr:	chr17

Start:	29204512
End:	29204546
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	CTCF-only,CTCF-bound (EH38D2920555,EH38E1854708)
Category:	CTCF-only

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000580812.1:38
GeneID:
HGNC/MGI_ID:	HGNC:21736
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MYO18A
Gene_symbol:	TWF1P1
Gene_synonyms:	A6ps1
Gene_source:	HGNC:21736

TATA-Box annotation

Distance to TSS:	-24131
Nearest PromoterID:	NM_001346766
Entrez ID:	399687
Nearest Unigene:	Hs.462590
Nearest Refseq:	NM_078471
Nearest Ensembl:	ENSG00000196535
Gene Name:	MYO18A
Gene Alias:	MAJN\|MYSPDZ\|SP-R210\|SPR210
Gene Type:	protein-coding
CpG%:	0.117647
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000580812.1:38
 |annotation=Intergenic
 |ccre_category=CTCF-only
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001346766
 |nearest_refseq=NM_078471
+|nearest_transcripts=
 |nearest_unigene=Hs.462590
 |peak_score=1