TSS: Rfhg 193834.1: Difference between revisions

Revision as of 17:21, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_193834.1
Species:	human
Chr:	chr17

Start:	42206515
End:	42206518
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2932360,EH38E1863293)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GHDC
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-12022
Nearest PromoterID:	NM_032484
Entrez ID:	84514
Nearest Unigene:	Hs.38039
Nearest Refseq:	NM_032484
Nearest Ensembl:	ENSG00000167925
Gene Name:	GHDC
Gene Alias:	D11LGP1\|LGP1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.250000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_012448, intron 16 of 18)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_032484
 |nearest_refseq=NM_032484
+|nearest_transcripts=
 |nearest_unigene=Hs.38039
 |peak_score=1