TSS: Rfhg 197050.1: Difference between revisions

Revision as of 18:22, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_197050.1
Species:	human
Chr:	chr17

Start:	62966430
End:	62966508
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2950958,EH38E1877108)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_025185.4:-195 NM_001394998.1:-195
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TANC2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	234
Nearest PromoterID:	NM_025185
Entrez ID:	26115
Nearest Unigene:	Hs.410889
Nearest Refseq:	NM_015623
Nearest Ensembl:	ENSG00000170921
Gene Name:	TANC2
Gene Alias:	ROLSA\|rols
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.797468
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_025185.4:-195 NM_001394998.1:-195
 |annotation=5' UTR (NM_025185, exon 1 of 26)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_025185
 |nearest_refseq=NM_015623
+|nearest_transcripts=
 |nearest_unigene=Hs.410889
 |peak_score=1