TSS: Rfhg 198164.1: Difference between revisions

Revision as of 18:42, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_198164.1
Species:	human
Chr:	chr17

Start:	73513606
End:	73513617
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2960902,EH38E1884320)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000583547.2:0 ENST00000583712.2:0
GeneID:	101928251
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	NR_135635.1:66 BC041474:68 ENST00000650299.1:-137 view more...

Gene_name:	LOC101928251
Gene_symbol:	LOC101928251
Gene_synonyms:
Gene_source:	EntrezGene:101928251

TATA-Box annotation

Distance to TSS:	-72
Nearest PromoterID:	NR_135635
Entrez ID:	101928251
Nearest Unigene:	Hs.434726
Nearest Refseq:	NR_135635
Nearest Ensembl:	ENSG00000264985
Gene Name:	LOC101928251
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000583547.2:0 ENST00000583712.2:0 NR_135635.1:66 BC041474:68 ENST00000650299.1:-137
 |annotation=promoter-TSS (NR_135635)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_135635
 |nearest_refseq=NR_135635
+|nearest_transcripts=NR_135635.1:66 BC041474:68 ENST00000650299.1:-137
 |nearest_unigene=Hs.434726
 |peak_score=1