TSS: Rfhg 199281.1: Difference between revisions

Revision as of 19:04, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_199281.1
Species:	human
Chr:	chr17

Start:	78358923
End:	78358939
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2966915,EH38E1889058)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF328479:25 MA564056:25
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AF159854:-156 AB006967:-156 CR536497:-156 BT019544:-156 CR541694:-156 KJ892670:-157 CU687476:-157 AM392896:-158 AM393146:-158 AM393491:-158 AB464720:-160 AB004904:-262 view more...

Gene_name:	SOCS3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1148
Nearest PromoterID:	NM_003955
Entrez ID:	9021
Nearest Unigene:	Hs.527973
Nearest Refseq:	NM_003955
Nearest Ensembl:	ENSG00000184557
Gene Name:	SOCS3
Gene Alias:	ATOD4\|CIS3\|Cish3\|SOCS-3\|SSI-3\|SSI3
Gene Type:	protein-coding
CpG%:	0.187500
GC%:	0.764706
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF328479:25 MA564056:25 AF159854:-156 AB006967:-156 CR536497:-156 BT019544:-156 CR541694:-156 KJ892670:-157 CU687476:-157 AM392896:-158 AM393146:-158 AM393491:-158 AB464720:-160 AB004904:-262
 |annotation=exon (NM_003955, exon 2 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003955
 |nearest_refseq=NM_003955
+|nearest_transcripts=AF159854:-156 AB006967:-156 CR536497:-156 BT019544:-156 CR541694:-156 KJ892670:-157 CU687476:-157 AM392896:-158 AM393146:-158 AM393491:-158 AB464720:-160 AB004904:-262
 |nearest_unigene=Hs.527973
 |peak_score=1