TSS: Rfhg 201111.1: Difference between revisions

Revision as of 19:38, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_201111.1
Species:	human
Chr:	chr18

Start:	5296342
End:	5296356
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2977204,EH38E1896792)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZBTB14
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-329
Nearest PromoterID:	NM_003409
Entrez ID:	7541
Nearest Unigene:	Hs.592340
Nearest Refseq:	NM_003409
Nearest Ensembl:	ENSG00000198081
Gene Name:	ZBTB14
Gene Alias:	ZF5\|ZFP-161\|ZFP-5\|ZFP161\|ZNF478
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.866667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_001143823)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003409
 |nearest_refseq=NM_003409
+|nearest_transcripts=
 |nearest_unigene=Hs.592340
 |peak_score=1