TSS: Rfhg 20154.1: Difference between revisions

Revision as of 19:46, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_20154.1
Species:	human
Chr:	chr1

Start:	221742327
End:	221742332
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2280638,EH38E1424922)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF321289:-65 MA556866:-65
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF205502:-81 MA441079:-81 view more...

Gene_name:	DUSP10
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-153
Nearest PromoterID:	NR_111940
Entrez ID:	11221
Nearest Unigene:	Hs.497822
Nearest Refseq:	NM_007207
Nearest Ensembl:	ENSG00000143507
Gene Name:	DUSP10
Gene Alias:	MKP-5\|MKP5
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF321289:-65 MA556866:-65 LF205502:-81 MA441079:-81
 |annotation=promoter-TSS (NR_111940)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_111940
 |nearest_refseq=NM_007207
+|nearest_transcripts=LF205502:-81 MA441079:-81
 |nearest_unigene=Hs.497822
 |peak_score=1