TSS: Rfhg 201947.1: Difference between revisions

Revision as of 19:53, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_201947.1
Species:	human
Chr:	chr18

Start:	23585625
End:	23585634
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2987719,EH38E1904203)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NPC1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	877
Nearest PromoterID:	NM_000271
Entrez ID:	4864
Nearest Unigene:	Hs.464779
Nearest Refseq:	NM_000271
Nearest Ensembl:	ENSG00000141458
Gene Name:	NPC1
Gene Alias:	NPC\|POGZ\|SLC65A1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.300000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_000271, intron 1 of 24)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000271
 |nearest_refseq=NM_000271
+|nearest_transcripts=
 |nearest_unigene=Hs.464779
 |peak_score=1