TSS: Rfhg 204213.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000382713.10:0 NM_152721.6:0 LF212753:-86 MA448330:-86 LF213431:114 MA449008:114 AY599248:135 BC096744:135 AB528935:322 LF344125:-451 MA579702:-451
|annotation=promoter-TSS (NM_152721)
|annotation=promoter-TSS (NM_152721)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_152721
|nearest_promoter_id=NM_152721
|nearest_refseq=NM_152721
|nearest_refseq=NM_152721
|nearest_transcripts=LF212753:-86 MA448330:-86 LF213431:114 MA449008:114 AY599248:135 BC096744:135 AB528935:322 LF344125:-451 MA579702:-451
|nearest_unigene=Hs.278285
|nearest_unigene=Hs.278285
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000382713.10
|transcript_name=ENST00000382713.10 NM_152721.6
|tss_cluster_detected=3
|tss_cluster_detected=3
|tss_id=rfhg_204213.1
|tss_id=rfhg_204213.1

Revision as of 20:36, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_204213.1
TSS ID(Version3):hg_170707.1
Species:human
Chr:chr18
Start:69400834
End:69400920
Strand:+
Source datasetsFANTOM5|PRJNA4843412|DRA013844
ProtocolCAGE|NETCAGE
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D3021940,EH38E1924999)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000382713.10:0
NM_152721.6:0
GeneID:220164
HGNC/MGI_ID:HGNC:28301
UniProt_ID:Q6PKX4
Nearer transcript ids and distances:
  • LF212753:-86
  • MA448330:-86
  • LF213431:114
  • MA449008:114
  • AY599248:135
  • BC096744:135
  • AB528935:322
  • LF344125:-451
  • MA579702:-451
view more...
Gene_name:DOK6
Gene_symbol:DOK6
Gene_synonyms:HsT3226 MGC20785
Gene_source:HGNC:28301



TATA-Box annotation

Distance to TSS:-11
Nearest PromoterID:NM_152721
Entrez ID:220164
Nearest Unigene:Hs.278285
Nearest Refseq:NM_152721
Nearest Ensembl:ENSG00000206052
Gene Name:DOK6
Gene Alias:DOK5L|HsT3226
Gene Type:protein-coding
CpG%:0.162791
GC%:0.850575
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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