TSS: Rfhg 207926.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000435033.1:0 ENST00000430385.3:0 ENST00000595766.1:0 NM_001322498.2:0 NM_001080821.3:0 BC057831:0 ENST00000419318.5:222 NM_001322497.2:222 AK027660:222
|annotation=promoter-TSS (NM_001322497)
|annotation=promoter-TSS (NM_001322497)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001080821
|nearest_promoter_id=NM_001080821
|nearest_refseq=NM_203381
|nearest_refseq=NM_203381
|nearest_transcripts=ENST00000419318.5:222 NM_001322497.2:222 AK027660:222
|nearest_unigene=Hs.546637
|nearest_unigene=Hs.546637
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000430385.3 ENST00000595766.1
|transcript_name=ENST00000435033.1 ENST00000430385.3 ENST00000595766.1 NM_001322498.2 NM_001080821.3 BC057831
|tss_cluster_detected=4
|tss_cluster_detected=4
|tss_id=rfhg_207926.1
|tss_id=rfhg_207926.1

Revision as of 21:46, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_207926.1
TSS ID(Version3):hg_179310.1
hg_179309.1
Species:human
Chr:chr19
Start:12401202
End:12401280
Strand:-
Source datasetsFANTOM5|EPD|PRJNA4843412|DRA013844
ProtocolCAGE|TSS_database|NETCAGE
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3042413,EH38E1939708)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000435033.1:0
ENST00000430385.3:0
ENST00000595766.1:0
NM_001322498.2:0
NM_001080821.3:0
BC057831:0
GeneID:90576
HGNC/MGI_ID:HGNC:28071
UniProt_ID:M0R0E1 Q96GE5
Nearer transcript ids and distances:
  • ENST00000419318.5:222
  • NM_001322497.2:222
  • AK027660:222
view more...
Gene_name:ZNF799
Gene_symbol:ZNF799
Gene_synonyms:HIT-40 MGC71805
Gene_source:HGNC:28071



TATA-Box annotation

Distance to TSS:30
Nearest PromoterID:NM_001080821
Entrez ID:90576
Nearest Unigene:Hs.546637
Nearest Refseq:NM_203381
Nearest Ensembl:ENSG00000196466
Gene Name:ZNF799
Gene Alias:HIT-40|ZNF842
Gene Type:protein-coding
CpG%:0.064103
GC%:0.607595
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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