TSS: Rfhg 210565.1: Difference between revisions

Revision as of 22:33, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_210565.1
Species:	human
Chr:	chr19

Start:	33302806
End:	33302857
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3056247,EH38E1949613)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000592982.2:0 NR_026887.2:0
GeneID:	80054
HGNC/MGI_ID:	HGNC:25710
UniProt_ID:
Nearer transcript ids and distances:	BC027959:14 AK022417:101 BC113872:213 BC114482:213 view more...

Gene_name:	CEBPA-DT
Gene_symbol:	CEBPA-DT
Gene_synonyms:	ADINR
Gene_source:	HGNC:25710

TATA-Box annotation

Distance to TSS:	10
Nearest PromoterID:	NR_026887
Entrez ID:	80054
Nearest Unigene:	Hs.287521
Nearest Refseq:	NR_026887
Nearest Ensembl:	ENSG00000267296
Gene Name:	CEBPA-DT
Gene Alias:	CEBPA-AS1
Gene Type:	ncRNA
CpG%:	0.078431
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000592982.2:0 NR_026887.2:0 BC027959:14 AK022417:101 BC113872:213 BC114482:213
 |annotation=promoter-TSS (NM_001287424)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_026887
 |nearest_refseq=NR_026887
+|nearest_transcripts=BC027959:14 AK022417:101 BC113872:213 BC114482:213
 |nearest_unigene=Hs.287521
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000592982.2
+|transcript_name=ENST00000592982.2 NR_026887.2
 |tss_cluster_detected=1
 |tss_id=rfhg_210565.1