TSS: Rfhg 211950.1: Difference between revisions

Revision as of 22:58, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_211950.1
Species:	human
Chr:	chr19

Start:	39408175
End:	39408215
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3061056,EH38E1953320)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZFP36
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1348
Nearest PromoterID:	NM_003407
Entrez ID:	7538
Nearest Unigene:	Hs.534052
Nearest Refseq:	NM_003407
Nearest Ensembl:	ENSG00000128016
Gene Name:	ZFP36
Gene Alias:	G0S24\|GOS24\|NUP475\|RNF162A\|TIS11\|TTP\|zfp-36
Gene Type:	protein-coding
CpG%:	0.075000
GC%:	0.682927
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_003407, exon 2 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003407
 |nearest_refseq=NM_003407
+|nearest_transcripts=
 |nearest_unigene=Hs.534052
 |peak_score=1