TSS: Rfhg 213145.1: Difference between revisions

Revision as of 23:22, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_213145.1
Species:	human
Chr:	chr19

Start:	44141496
End:	44141513
Strand:	-

Source datasets

PRJNA615891

Protocol

TIF-seq2|SLIC_CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3065096,EH38E1956553)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK096984:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZNF234
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-50
Nearest PromoterID:	NM_001144824
Entrez ID:	10780
Nearest Unigene:	Hs.235992
Nearest Refseq:	NM_006630
Nearest Ensembl:	ENSG00000263002
Gene Name:	ZNF234
Gene Alias:	HZF4\|ZNF269
Gene Type:	protein-coding
CpG%:	0.058824
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK096984:0
 |annotation=promoter-TSS (NM_001144824)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001144824
 |nearest_refseq=NM_006630
+|nearest_transcripts=
 |nearest_unigene=Hs.235992
 |peak_score=1