TSS: Rfhg 213627.1: Difference between revisions

Revision as of 23:31, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_213627.1
Species:	human
Chr:	chr19

Start:	45767452
End:	45767471
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3066587,EH38E1957782)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	DM1-AS
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-335
Nearest PromoterID:	NR_147193
Entrez ID:	109729182
Nearest Unigene:	Hs.664071
Nearest Refseq:	NR_147193
Nearest Ensembl:	ENSG00000267395
Gene Name:	DM1-AS
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.052632
GC%:	0.700000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NR_147193)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_147193
 |nearest_refseq=NR_147193
+|nearest_transcripts=
 |nearest_unigene=Hs.664071
 |peak_score=1