TSS: Rfhg 214348.1: Difference between revisions

Revision as of 23:44, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_214348.1
Species:	human
Chr:	chr19

Start:	48602684
End:	48602686
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3069421,EH38E1960092)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SPACA4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-4057
Nearest PromoterID:	NM_133498
Entrez ID:	171169
Nearest Unigene:	Hs.122599
Nearest Refseq:	NM_133498
Nearest Ensembl:	ENSG00000177202
Gene Name:	SPACA4
Gene Alias:	SAMP14
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_017708, intron 4 of 4)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_133498
 |nearest_refseq=NM_133498
+|nearest_transcripts=
 |nearest_unigene=Hs.122599
 |peak_score=1