TSS: Rfhg 217676.1: Difference between revisions

Revision as of 00:46, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_217676.1
Species:	human
Chr:	chr20

Start:	4815835
End:	4815850
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3272892,EH38E2094499)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RASSF2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-719
Nearest PromoterID:	NM_170774
Entrez ID:	9770
Nearest Unigene:	Hs.631504
Nearest Refseq:	NM_014737
Nearest Ensembl:	ENSG00000101265
Gene Name:	RASSF2
Gene Alias:	CENP-34\|RASFADIN
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_170774)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_170774
 |nearest_refseq=NM_014737
+|nearest_transcripts=
 |nearest_unigene=Hs.631504
 |peak_score=1