TSS: Rfhg 218833.1: Difference between revisions

Revision as of 01:06, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_218833.1
Species:	human
Chr:	chr20

Start:	23420616
End:	23420652
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3288016,EH38E2104263)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF349993:389 MA585570:389
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	NAPB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	854
Nearest PromoterID:	NR_104266
Entrez ID:	63908
Nearest Unigene:	Hs.269471
Nearest Refseq:	NM_022080
Nearest Ensembl:	ENSG00000125814
Gene Name:	NAPB
Gene Alias:	SNAP-BETA\|SNAPB
Gene Type:	protein-coding
CpG%:	0.138889
GC%:	0.594595
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF349993:389 MA585570:389
 |annotation=intron (NM_001283026, intron 1 of 9)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_104266
 |nearest_refseq=NM_022080
+|nearest_transcripts=
 |nearest_unigene=Hs.269471
 |peak_score=1