TSS: Rfhg 219433.1: Difference between revisions

Revision as of 01:16, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_219433.1
Species:	human
Chr:	chr20

Start:	32632974
End:	32632978
Strand:	-

Source datasets

PRJNA401781

Protocol

CAGE|oligo_capping

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3292397,EH38E2107186)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	C20orf203
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	40965
Nearest PromoterID:	NM_182584
Entrez ID:	284805
Nearest Unigene:	Hs.353262
Nearest Refseq:	NM_182584
Nearest Ensembl:	ENSG00000198547
Gene Name:	C20orf203
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.200000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_182584, exon 6 of 6)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_182584
 |nearest_refseq=NM_182584
+|nearest_transcripts=
 |nearest_unigene=Hs.353262
 |peak_score=1