TSS: Rfhg 220828.1: Difference between revisions

Revision as of 01:41, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_220828.1
Species:	human
Chr:	chr20

Start:	44973177
End:	44973300
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3303306,EH38E2115233)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	STK4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6726
Nearest PromoterID:	NR_147975
Entrez ID:	6789
Nearest Unigene:	Hs.472838
Nearest Refseq:	NM_006282
Nearest Ensembl:	ENSG00000101109
Gene Name:	STK4
Gene Alias:	KRS2\|MST1\|YSK3
Gene Type:	protein-coding
CpG%:	0.016260
GC%:	0.314516
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=TTS (NR_147975)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_147975
 |nearest_refseq=NM_006282
+|nearest_transcripts=
 |nearest_unigene=Hs.472838
 |peak_score=1