TSS: Rfhg 222034.1: Difference between revisions

Revision as of 02:03, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_222034.1
Species:	human
Chr:	chr20

Start:	50735676
End:	50735703
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3309311,EH38E2120186)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PARD6B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	4109
Nearest PromoterID:	NM_032521
Entrez ID:	84612
Nearest Unigene:	Hs.589848
Nearest Refseq:	NM_032521
Nearest Ensembl:	ENSG00000124171
Gene Name:	PARD6B
Gene Alias:	PAR6B
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_032521, intron 1 of 2)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_032521
 |nearest_refseq=NM_032521
+|nearest_transcripts=
 |nearest_unigene=Hs.589848
 |peak_score=1