TSS: Rfhg 222477.1: Difference between revisions

Revision as of 02:10, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_222477.1
Species:	human
Chr:	chr20

Start:	56787860
End:	56787860
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3314403,EH38E2123812)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TFAP2C
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	158554
Nearest PromoterID:	NM_003222
Entrez ID:	7022
Nearest Unigene:	Hs.473152
Nearest Refseq:	NM_003222
Nearest Ensembl:	ENSG00000087510
Gene Name:	TFAP2C
Gene Alias:	AP2-GAMMA\|ERF1\|TFAP2G\|hAP-2g
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003222
 |nearest_refseq=NM_003222
+|nearest_transcripts=
 |nearest_unigene=Hs.473152
 |peak_score=1