TSS: Rfhg 222586.1: Difference between revisions

Revision as of 02:12, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_222586.1
Species:	human
Chr:	chr20

Start:	57705358
End:	57705358
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3315568,EH38E2124804)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PMEPA1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	4657
Nearest PromoterID:	NM_020182
Entrez ID:	56937
Nearest Unigene:	Hs.517155
Nearest Refseq:	NM_020182
Nearest Ensembl:	ENSG00000124225
Gene Name:	PMEPA1
Gene Alias:	STAG1\|TMEPAI
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_199171, intron 1 of 3)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_020182
 |nearest_refseq=NM_020182
+|nearest_transcripts=
 |nearest_unigene=Hs.517155
 |peak_score=1