TSS: Rfhg 2227.1: Difference between revisions

Revision as of 02:14, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_2227.1
Species:	human
Chr:	chr1

Start:	16174297
End:	16174354
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2131371,EH38E1322256)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	EPHA2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-18256
Nearest PromoterID:	NM_004431
Entrez ID:	1969
Nearest Unigene:	Hs.171596
Nearest Refseq:	NM_004431
Nearest Ensembl:	ENSG00000142627
Gene Name:	EPHA2
Gene Alias:	ARCC2\|CTPA\|CTPP1\|CTRCT6\|ECK
Gene Type:	protein-coding
CpG%:	0.017544
GC%:	0.655172
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_004431
 |nearest_refseq=NM_004431
+|nearest_transcripts=
 |nearest_unigene=Hs.171596
 |peak_score=1