TSS: Rfhg 225825.1: Difference between revisions

Revision as of 03:05, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_225825.1
Species:	human
Chr:	chr21

Start:	36005132
End:	36005145
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3338913,EH38E2139944)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_110419.1:175
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000457157.2:193

Gene_name:	LINC01436
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-182
Nearest PromoterID:	NR_110419
Entrez ID:	100996609
Nearest Unigene:	Hs.742062
Nearest Refseq:	NR_110419
Nearest Ensembl:
Gene Name:	LINC01436
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_110419.1:175 ENST00000457157.2:193
 |annotation=promoter-TSS (NR_110418)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_110419
 |nearest_refseq=NR_110419
+|nearest_transcripts=ENST00000457157.2:193
 |nearest_unigene=Hs.742062
 |peak_score=1