TSS: Rfhg 225955.1: Difference between revisions

Revision as of 03:07, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_225955.1
Species:	human
Chr:	chr21

Start:	37366810
End:	37366862
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3340239,EH38E2140970)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF210675:13 MA446252:13
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000647188.2:-37 NM_001347723.2:-37 NM_001347721.2:-37 ENST00000647504.1:72 AB015282:72 ENST00000644942.1:239 view more...

Gene_name:	DYRK1A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	63
Nearest PromoterID:	NM_001347721
Entrez ID:	1859
Nearest Unigene:	Hs.368240
Nearest Refseq:	NM_001396
Nearest Ensembl:	ENSG00000157540
Gene Name:	DYRK1A
Gene Alias:	DYRK\|DYRK1\|HP86\|MNB\|MNBH\|MRD7
Gene Type:	protein-coding
CpG%:	0.057692
GC%:	0.396226
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):	0(TTTTTTAAACCC,+,0.00)

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF210675:13 MA446252:13 ENST00000647188.2:-37 NM_001347723.2:-37 NM_001347721.2:-37 ENST00000647504.1:72 AB015282:72 ENST00000644942.1:239
 |annotation=promoter-TSS (NM_101395)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001347721
 |nearest_refseq=NM_001396
+|nearest_transcripts=ENST00000647188.2:-37 NM_001347723.2:-37 NM_001347721.2:-37 ENST00000647504.1:72 AB015282:72 ENST00000644942.1:239
 |nearest_unigene=Hs.368240
 |peak_score=1