TSS: Rfhg 227690.1: Difference between revisions

Revision as of 03:37, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_227690.1
Species:	human
Chr:	chr22

Start:	19765919
End:	19765942
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3352683,EH38E2149927)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TBX1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	9227
Nearest PromoterID:	NM_080647
Entrez ID:	6899
Nearest Unigene:	Hs.173984
Nearest Refseq:	NM_005992
Nearest Ensembl:	ENSG00000184058
Gene Name:	TBX1
Gene Alias:	CAFS\|CATCH22\|CTHM\|DGCR\|DGS\|DORV\|TBX1C\|TGA\|VCF\|VCFS
Gene Type:	protein-coding
CpG%:	0.173913
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_080647, exon 8 of 9)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_080647
 |nearest_refseq=NM_005992
+|nearest_transcripts=
 |nearest_unigene=Hs.173984
 |peak_score=1