TSS: Rfhg 2278.1: Difference between revisions

Revision as of 03:39, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_2278.1
Species:	human
Chr:	chr1

Start:	16645486
End:	16645491
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2131835,EH38E1322608)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MST1P2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-86
Nearest PromoterID:	NR_027504
Entrez ID:	11209
Nearest Unigene:	Hs.349110
Nearest Refseq:	NR_027504
Nearest Ensembl:
Gene Name:	MST1P2
Gene Alias:	MSPL-1\|MSPL-2\|MSPL-3\|MSPL1\|MSPL2\|MSPL3\|MSTP1\|MSTP2\|MSTP3
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NR_027504)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_027504
 |nearest_refseq=NR_027504
+|nearest_transcripts=
 |nearest_unigene=Hs.349110
 |peak_score=1