TSS: Rfhg 230296.1: Difference between revisions

Revision as of 04:24, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_230296.1
Species:	human
Chr:	chr22

Start:	38681793
End:	38681802
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3371592,EH38E2163960)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000412067.1:6
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000666365.1:-10 ENST00000444381.1:-18 BC036921:-18 ENST00000431924.2:23 ENST00000656432.1:-45 view more...

Gene_name:	TOMM22
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-160
Nearest PromoterID:	NM_020243
Entrez ID:	56993
Nearest Unigene:	Hs.595072
Nearest Refseq:	NM_020243
Nearest Ensembl:	ENSG00000100216
Gene Name:	TOMM22
Gene Alias:	1C9-2\|MST065\|MSTP065\|TOM22
Gene Type:	protein-coding
CpG%:	0.111111
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000412067.1:6 ENST00000666365.1:-10 ENST00000444381.1:-18 BC036921:-18 ENST00000431924.2:23 ENST00000656432.1:-45
 |annotation=promoter-TSS (NM_020243)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_020243
 |nearest_refseq=NM_020243
+|nearest_transcripts=ENST00000666365.1:-10 ENST00000444381.1:-18 BC036921:-18 ENST00000431924.2:23 ENST00000656432.1:-45
 |nearest_unigene=Hs.595072
 |peak_score=1