TSS: Rfhg 230452.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=promoter-TSS (NM_175709)
|annotation=promoter-TSS (NM_175709)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NM_175709
|nearest_promoter_id=NM_175709
|nearest_refseq=NM_175709
|nearest_refseq=NM_175709
|nearest_transcripts=
|nearest_unigene=Hs.356416
|nearest_unigene=Hs.356416
|peak_score=1
|peak_score=1

Revision as of 04:27, 12 November 2024

Basic information about the TSS


TSS ID:rfhg_230452.1
Species:human
Chr:chr22
Start:39152939
End:39152957
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D3372129,EH38E2164372)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:CBX7
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-268
    Nearest PromoterID:NM_175709
    Entrez ID:23492
    Nearest Unigene:Hs.356416
    Nearest Refseq:NM_175709
    Nearest Ensembl:ENSG00000100307
    Gene Name:CBX7
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.055556
    GC%:0.684211
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):