TSS: Rfhg 230508.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000473613.5:0 ENST00000216160.11:0 ENST00000331454.3:0 NM_006116.3:0 NM_153497.3:0 AK296314:0 BC038582:0 AF425640:0 AK312456:0 U49928:0 AK291668:0 AK316004:0 AK308903:0 CU690722:0 AB591024:0 KJ893047:0 BC050554:-3
|annotation=promoter-TSS (NM_006116)
|annotation=promoter-TSS (NM_006116)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_006116
|nearest_promoter_id=NM_006116
|nearest_refseq=NM_006116
|nearest_refseq=NM_006116
|nearest_transcripts=BC050554:-3
|nearest_unigene=Hs.507681
|nearest_unigene=Hs.507681
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000473613.5 ENST00000216160.11 ENST00000331454.3 AK296314 BC038582 AF425640 AK312456 U49928 AK291668 AK316004 AK308903
|transcript_name=ENST00000473613.5 ENST00000216160.11 ENST00000331454.3 NM_006116.3 NM_153497.3 AK296314 BC038582 AF425640 AK312456 U49928 AK291668 AK316004 AK308903 CU690722 AB591024 KJ893047
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_230508.1
|tss_id=rfhg_230508.1

Revision as of 04:28, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_230508.1
Species:human
Chr:chr22
Start:39399744
End:39399806
Strand:+
Source datasetsPRJNA4843412|DRA013844|PRJDB5282|PRJNA615891|PRJNA401781
|PRJNA548673
ProtocolNETCAGE|CAGE|C1CAGE|SLIC_CAGE|TIF-seq2|RAMPAGE
|oligo_capping|ReCappable-seq
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3372459,EH38E2164659)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000473613.5:0
ENST00000216160.11:0
ENST00000331454.3:0
NM_006116.3:0
NM_153497.3:0
AK296314:0
BC038582:0
AF425640:0
AK312456:0
U49928:0
AK291668:0
AK316004:0
AK308903:0
CU690722:0
AB591024:0
KJ893047:0
GeneID:10454
HGNC/MGI_ID:HGNC:18157
UniProt_ID:A8K6K3 B7Z3S5 B7Z9N9 Q15750
Nearer transcript ids and distances:
  • BC050554:-3
Gene_name:TAB1
Gene_symbol:TAB1
Gene_synonyms:
Gene_source:HGNC:18157



TATA-Box annotation

Distance to TSS:-5
Nearest PromoterID:NM_006116
Entrez ID:10454
Nearest Unigene:Hs.507681
Nearest Refseq:NM_006116
Nearest Ensembl:ENSG00000100324
Gene Name:TAB1
Gene Alias:3'-Tab1|MAP3K7IP1
Gene Type:protein-coding
CpG%:0.096774
GC%:0.730159
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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