TSS: Rfhg 230952.1: Difference between revisions

Revision as of 04:35, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_230952.1
Species:	human
Chr:	chr22

Start:	42318203
End:	42318221
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3375451,EH38E2167060)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000675876.1:-18
GeneID:	6942
HGNC/MGI_ID:	HGNC:11631
UniProt_ID:	A0A6Q8PH68
Nearer transcript ids and distances:

Gene_name:	TCF20
Gene_symbol:	TCF20
Gene_synonyms:	AR1 SPBP
Gene_source:	HGNC:11631

TATA-Box annotation

Distance to TSS:	-34285
Nearest PromoterID:	NM_005650
Entrez ID:	6942
Nearest Unigene:	Hs.475018
Nearest Refseq:	NM_005650
Nearest Ensembl:	ENSG00000100207
Gene Name:	TCF20
Gene Alias:	AR1\|DDVIBA\|SPBP\|TCF-20
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.473684
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000675876.1:-18
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005650
 |nearest_refseq=NM_005650
+|nearest_transcripts=
 |nearest_unigene=Hs.475018
 |peak_score=1