TSS: Rfhg 235374.1: Difference between revisions

Revision as of 05:50, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_235374.1
Species:	human
Chr:	chrX

Start:	41724175
End:	41724183
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D4278397,EH38E2751627)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000302548.5:0 NM_080817.5:0 AK313702:0 AL832460:0 AK122626:0
GeneID:	27197
HGNC/MGI_ID:	HGNC:4533
UniProt_ID:	Q96P67
Nearer transcript ids and distances:	BC070180:-20

Gene_name:	GPR82
Gene_symbol:	GPR82
Gene_synonyms:
Gene_source:	HGNC:4533

TATA-Box annotation

Distance to TSS:	-2
Nearest PromoterID:	NM_080817
Entrez ID:	27197
Nearest Unigene:	Hs.567457
Nearest Refseq:	NM_080817
Nearest Ensembl:	ENSG00000171657
Gene Name:	GPR82
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000302548.5:0 NM_080817.5:0 AK313702:0 AL832460:0 AK122626:0 BC070180:-20
 |annotation=promoter-TSS (NM_080817)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_080817
 |nearest_refseq=NM_080817
+|nearest_transcripts=BC070180:-20
 |nearest_unigene=Hs.567457
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000302548.5 AK313702 AL832460 AK122626
+|transcript_name=ENST00000302548.5 NM_080817.5 AK313702 AL832460 AK122626
 |tss_cluster_detected=2
 |tss_id=rfhg_235374.1