TSS: Rfhg 237459.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000644105.2:0 ENST00000646118.1:0 NM_001367858.2:0 NM_001367857.2:0 ENST00000647304.1:-84 ENST00000646235.1:-125 | |||
|annotation=promoter-TSS (NM_021998) | |annotation=promoter-TSS (NM_021998) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001367858 | |nearest_promoter_id=NM_001367858 | ||
|nearest_refseq=NM_001012980 | |nearest_refseq=NM_001012980 | ||
|nearest_transcripts=ENST00000647304.1:-84 ENST00000646235.1:-125 | |||
|nearest_unigene=Hs.640783 | |nearest_unigene=Hs.640783 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000644105.2 ENST00000646118.1 | |transcript_name=ENST00000644105.2 ENST00000646118.1 NM_001367858.2 NM_001367857.2 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_237459.1 | |tss_id=rfhg_237459.1 | ||
Revision as of 06:27, 12 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4293959,EH38E2760157) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001367858 |
| Entrez ID: | 340562 |
| Nearest Unigene: | Hs.640783 |
| Nearest Refseq: | NM_001012980 |
| Nearest Ensembl: | ENSG00000184788 |
| Gene Name: | SATL1 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.136364 |
| GC%: | 0.739130 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.