TSS: Rfhg 237799.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000661018.1:0 ENST00000664568.1:0 ENST00000431616.5:0 ENST00000668536.1:0 ENST00000440496.5:0 ENST00000420471.5:0 ENST00000663114.1:0 ENST00000658813.1:0 ENST00000435966.1:0 NR_146588.1:0 NR_146590.1:0 NR_146592.1:0 NR_038988.2:0 NR_146591.1:0 NR_146593.1:0 NR_146589.1:0 BC040959:0 ENST00000656628.1:40
|annotation=promoter-TSS (NR_038988)
|annotation=promoter-TSS (NR_038988)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_146592
|nearest_promoter_id=NR_146592
|nearest_refseq=NR_038988
|nearest_refseq=NR_038988
|nearest_transcripts=ENST00000656628.1:40
|nearest_unigene=Hs.556850
|nearest_unigene=Hs.556850
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000661018.1 ENST00000664568.1 ENST00000431616.5 ENST00000668536.1 ENST00000440496.5 ENST00000420471.5 ENST00000663114.1 ENST00000658813.1 ENST00000435966.1 BC040959
|transcript_name=ENST00000661018.1 ENST00000664568.1 ENST00000431616.5 ENST00000668536.1 ENST00000440496.5 ENST00000420471.5 ENST00000663114.1 ENST00000658813.1 ENST00000435966.1 NR_146588.1 NR_146590.1 NR_146592.1 NR_038988.2 NR_146591.1 NR_146593.1 NR_146589.1 BC040959
|tss_cluster_detected=8
|tss_cluster_detected=8
|tss_id=rfhg_237799.1
|tss_id=rfhg_237799.1

Revision as of 06:33, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_237799.1
TSS ID(Version3):hg_197003.1
Species:human
Chr:chrX
Start:102769148
End:102769261
Strand:+
Source datasetsFANTOM5|DRA000914|PRJNA401781|PRJNA615891|PRJNA4843412
|DRA013844|PRJDB5282
ProtocolCAGE|SLIC_CAGE|TIF-seq2|NETCAGE|C1CAGE
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4298774,EH38E2762051)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000661018.1:0
ENST00000664568.1:0
ENST00000431616.5:0
ENST00000668536.1:0
ENST00000440496.5:0
ENST00000420471.5:0
ENST00000663114.1:0
ENST00000658813.1:0
ENST00000435966.1:0
NR_146588.1:0
NR_146590.1:0
NR_146592.1:0
NR_038988.2:0
NR_146591.1:0
NR_146593.1:0
NR_146589.1:0
BC040959:0
GeneID:100287765
HGNC/MGI_ID:HGNC:44263
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000656628.1:40
Gene_name:LINC00630
Gene_symbol:LINC00630
Gene_synonyms:
Gene_source:HGNC:44263



TATA-Box annotation

Distance to TSS:51
Nearest PromoterID:NR_146592
Entrez ID:100287765
Nearest Unigene:Hs.556850
Nearest Refseq:NR_038988
Nearest Ensembl:
Gene Name:LINC00630
Gene Alias:-
Gene Type:ncRNA
CpG%:0.035398
GC%:0.543860
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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