TSS: Rfhg 238698.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000217909.8:0 ENST00000488158.5:0 NM_145305.3:0 AK094254:0 BC071871:0 AK303932:0 AK091304:0 AK292035:0 CU676444:3 HQ447835:3 KJ900434:3 ENST00000493093.5:8 AL590525:126 BC019584:-247
|annotation=promoter-TSS (NM_145305)
|annotation=promoter-TSS (NM_145305)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NM_145305
|nearest_promoter_id=NM_145305
|nearest_refseq=NM_145305
|nearest_refseq=NM_145305
|nearest_transcripts=CU676444:3 HQ447835:3 KJ900434:3 ENST00000493093.5:8 AL590525:126 BC019584:-247
|nearest_unigene=Hs.496658
|nearest_unigene=Hs.496658
|peak_score=1
|peak_score=1
Line 33: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000217909.8 ENST00000488158.5 AK094254 BC071871 AK303932 AK091304 AK292035
|transcript_name=ENST00000217909.8 ENST00000488158.5 NM_145305.3 AK094254 BC071871 AK303932 AK091304 AK292035
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_238698.1
|tss_id=rfhg_238698.1

Revision as of 06:50, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_238698.1
Species:human
Chr:chrX
Start:119399307
End:119399401
Strand:+
Source datasetsPRJNA4843412|DRA013844
ProtocolNETCAGE|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D4306591,EH38E2766116)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000217909.8:0
ENST00000488158.5:0
NM_145305.3:0
AK094254:0
BC071871:0
AK303932:0
AK091304:0
AK292035:0
GeneID:203427
HGNC/MGI_ID:HGNC:30557
UniProt_ID:A8K7M0 B4E1P8 Q8WUT9
Nearer transcript ids and distances:
  • CU676444:3
  • HQ447835:3
  • KJ900434:3
  • ENST00000493093.5:8
  • AL590525:126
  • BC019584:-247
view more...
Gene_name:SLC25A43
Gene_symbol:SLC25A43
Gene_synonyms:
Gene_source:HGNC:30557



TATA-Box annotation

Distance to TSS:18
Nearest PromoterID:NM_145305
Entrez ID:203427
Nearest Unigene:Hs.496658
Nearest Refseq:NM_145305
Nearest Ensembl:ENSG00000077713
Gene Name:SLC25A43
Gene Alias:-
Gene Type:protein-coding
CpG%:0.127660
GC%:0.831579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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